Basic Information
Locus ID:
evm.TU.LG18.773
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 22344540 | 22345850 | + | evm.TU.LG18.773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 47,961.28 Da | 48.44 | 107.09 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 31 | 73 | 3.49362E-25 | - |
| Pfam | PF04564 | U-box domain | 27 | 98 | 4.7E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 145 | 418 | 1.44E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 103 | 3.93E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 113 | 413 | 2.4E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 100 | 8.2E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 30 | 93 | 1.8E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 26 | 100 | 37.383694 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021719575.1 | U-box domain-containing protein 20-like [Chenopodium quinoa] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9D2A2 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology