Basic Information
Locus ID:
evm.TU.LG18.750
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 21931986 | 21932708 | + | evm.TU.LG18.750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 26,653.37 Da | 37.53 | 61.38 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 19 | 63 | 5.2457E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 19 | 66 | 2.0E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 17 | 74 | 3.54E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 75 | 2.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 21 | 61 | 2.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 21 | 62 | 13.507235 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 36 | 45 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 107 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_028099503.1 | E3 ubiquitin-protein ligase RNF185 [Camellia sinensis] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9ESR7 | RING-type E3 ubiquitin transferase (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology