Basic Information
Locus ID:
evm.TU.LG18.727
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 21578921 | 21584927 | - | evm.TU.LG18.727 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 125,434.73 Da | 35.57 | 105.10 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 887 | 1107 | 1.76746E-118 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1 | 240 | 4.4231E-75 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 266 | 467 | 8.17022E-107 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 571 | 864 | 4.1316E-86 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 906 | 1054 | 6.5E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 574 | 817 | 6.7E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 285 | 419 | 5.7E-22 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 11 | 219 | 2.1E-20 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 267 | 491 | 6.1E-59 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 882 | 1118 | 1.28E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 571 | 871 | 4.71E-49 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 3 | 247 | 5.23E-20 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 241 | 2.2E-30 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 534 | 869 | 1.6E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 242 | 510 | 8.6E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 872 | 1125 | 3.6E-78 | IPR027417 |
| SMART | SM00382 | AAA_5 | 294 | 467 | 6.5E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 915 | 1107 | 9.8E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 889 | 1123 | 18.027342 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 266 | 490 | 22.442419 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1 | 232 | 26.332489 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 573 | 847 | 32.207813 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 392 | 406 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034925213.1 | ABC transporter C family member 3-like [Populus alba] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AP61 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_006380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology