Basic Information
Locus ID:
evm.TU.LG18.533
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 18216722 | 18224719 | + | evm.TU.LG18.533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 51,529.54 Da | 32.66 | 90.23 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 31 | 192 | 2.01055E-87 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 362 | 476 | 1.88521E-60 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 28 | 195 | 5.4E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 408 | 469 | 2.4E-12 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 225 | 295 | 2.7E-12 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 362 | 474 | 1.97E-28 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 220 | 339 | 8.18E-21 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 28 | 202 | 1.89E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 355 | 480 | 2.4E-38 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 215 | 298 | 4.7E-19 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 299 | 349 | 9.2E-6 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 25 | 201 | 1.1E-57 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 23 | 302 | 2.0E-104 | IPR012110 |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 294 | 480 | 1.7E-64 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 421 | 440 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_010676788.2 | pyruvate decarboxylase 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M040 | Pyruvate decarboxylase 4 OS=Arabidopsis thaliana OX=3702 GN=PDC4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AB16 | pyruvate decarboxylase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology