Basic Information
Locus ID:
evm.TU.LG18.457
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 17116209 | 17117468 | - | evm.TU.LG18.457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 46,952.31 Da | 43.52 | 91.53 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 29 | 63 | 1.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 28 | 77 | 8.9E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 65 | 1.4E-7 | - |
| SMART | SM00256 | fbox_2 | 29 | 69 | 2.7E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 132 | 347 | 2.9E-19 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11620.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010665975.2 | F-box/kelch-repeat protein At3g23880 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SAB5 | Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana OX=3702 GN=At1g11620 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7C9CI64 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2724 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah025637, Ah027249 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012587 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016227, gene:ENSEOMG00000037258 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0008680, CQ.Regalona.r1.9BG0013020 |
| Apiaceae | Apium graveolens | 3 | Ag1G00339, Ag4G01763, Ag4G02283 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.310 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00009381, Pov_00014464, Pov_00024395 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.457, evm.TU.LG26.579 |