Basic Information
Locus ID:
evm.TU.LG18.392
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 15817256 | 15831714 | + | evm.TU.LG18.392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 62,025.99 Da | 30.32 | 103.06 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 243 | 345 | 8.00292E-22 | - |
| CDD | cd00030 | C2 | 422 | 522 | 4.72469E-26 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 49 | 228 | 1.0E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 420 | 517 | 5.5E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 242 | 345 | 1.2E-18 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 419 | 537 | 5.51E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 239 | 371 | 1.31E-26 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 404 | 539 | 1.9E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 237 | 378 | 7.7E-28 | IPR035892 |
| SMART | SM00239 | C2_3c | 242 | 342 | 1.6E-19 | IPR000008 |
| SMART | SM00239 | C2_3c | 421 | 519 | 3.4E-19 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 401 | 520 | 20.775972 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 222 | 343 | 18.318785 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 46 | 228 | 30.012278 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 437 | 449 | 7.9E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 463 | 476 | 7.9E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 485 | 493 | 7.9E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021862189.1 | synaptotagmin-5-like [Spinacia oleracea] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EDV8 | Synaptotagmin-5 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology