halophFGD

Basic Information

Locus ID: evm.TU.LG18.381

Species & Taxonomic ID: Portulaca oleracea & 46147

Genome Assembly: GWHCBIU00000000

Description: RING-type E3 ubiquitin transferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr18	15603511	15620878	-	evm.TU.LG18.381

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.10	124,001.67 Da	54.52	90.62	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	532	574	2.79623E-24	-
Pfam	PF00514	Armadillo/beta-catenin-like repeat	951	988	5.8E-6	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	908	947	2.2E-4	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	869	906	1.1E-9	IPR000225
Pfam	PF04564	U-box domain	528	598	2.9E-21	IPR003613
Pfam	PF02271	Ubiquinol-cytochrome C reductase complex 14kD subunit	153	234	6.7E-24	IPR003197
SUPERFAMILY	SSF81524	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	126	244	1.83E-29	IPR036544
SUPERFAMILY	SSF48371	ARM repeat	837	1110	2.14E-47	IPR016024
SUPERFAMILY	SSF57850	RING/U-box	517	605	9.08E-29	-
Gene3D	G3DSA:1.25.10.10	-	822	1118	9.3E-61	IPR011989
Gene3D	G3DSA:1.10.1090.10	-	123	239	1.8E-29	IPR036544
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	527	601	6.0E-26	IPR013083
SMART	SM00504	Ubox_2	531	594	6.6E-31	IPR003613
SMART	SM00185	arm_5	990	1029	0.0034	IPR000225
SMART	SM00185	arm_5	1030	1070	0.89	IPR000225
SMART	SM00185	arm_5	908	948	0.15	IPR000225
SMART	SM00185	arm_5	949	989	0.47	IPR000225
SMART	SM00185	arm_5	867	907	1.0E-6	IPR000225
SMART	SM00185	arm_5	1072	1112	190.0	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	878	920	12.8624	IPR000225
ProSiteProfiles	PS51698	U-box domain profile.	527	601	42.009995	IPR003613
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	1001	1042	10.7274	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	960	1002	10.4824	IPR000225
MobiDBLite	mobidb-lite	consensus disorder prediction	701	732	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	618	642	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	757	835	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	58	89	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	69	89	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	708	726	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	618	655	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	783	797	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	757	778	-	-
Coils	Coil	Coil	471	494	-	-

Gene Ontology

Biological Process:

GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c) GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity) GO:0005515 (protein binding)

Cellular Component:

GO:0045275 (respiratory chain complex III)

KEGG Pathway

KO Term:

K08332 (vacuolar protein 8)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G23140.2	RING/U-box superfamily protein with ARM repeat domain.
RefSeq	XP_010670739.1	U-box domain-containing protein 4 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	O22193	U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3
TrEMBL	A0A7C9AAE8	RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg4700, jg4701
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23981, gene_25145
Amaranthaceae	Atriplex hortensis	1	Ah031925
Amaranthaceae	Beta vulgaris	3	BVRB_2g043480, BVRB_2g043510, BVRB_6g127640
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg13104, Sbi_jg30282, Sbi_jg43700, Sbi_jg51997 ... Sbi_jg52745
Amaranthaceae	Salicornia europaea	3	Seu_jg18207, Seu_jg9099, Seu_jg9860
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010153, GOSA_00023210
Amaranthaceae	Suaeda glauca	5	Sgl33857, Sgl39230, Sgl65815, Sgl65847, Sgl70157
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003241, gene:ENSEOMG00000013691 ... gene:ENSEOMG00000020408, gene:ENSEOMG00000021932, gene:ENSEOMG00000028225, gene:ENSEOMG00000048074
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0001890, CQ.Regalona.r1.2BG0002930 ... CQ.Regalona.r1.6AG0025690, CQ.Regalona.r1.6BG0027230
Anacardiaceae	Pistacia vera	1	pistato.v30205470
Apiaceae	Apium graveolens	2	Ag10G01048, Ag5G00312
Arecaceae	Cocos nucifera	4	COCNU_09G009970, COCNU_10G009950, COCNU_10G009960 ... scaffold006710G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103716639, gene-LOC103720451
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.3469.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G13639, Ftri18G27750, Ftri1G22182, Ftri6G20170
Brassicaceae	Arabidopsis thaliana	2	AT2G23140.1, AT5G67340.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000047m.g.v1.0, Thhalv10003745m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g29320.v2.2, Sp4g02200.v2.2
Brassicaceae	Brassica nigra	4	BniB01g020620.2N, BniB02g020030.2N, BniB06g014510.2N ... BniB07g043720.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1384
Casuarinaceae	Casuarina glauca	1	Cgl05G1385
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno11g11290, gene.Cymno11g11310
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate05g03190, gene.Thate05g03210, gene.Thate05g03280 ... gene.Thate05g03300, gene.Thate06g20280, gene.Thate07g01620
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10061, nbisL1-mrna-10549, nbisL1-mrna-10550 ... nbisL1-mrna-6656
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.945
Plantaginaceae	Plantago ovata	1	Pov_00003835
Plumbaginaceae	Limonium bicolor	2	Lb1G05542, Lb2G08468
Poaceae	Echinochloa crus-galli	6	AH02.4102, AH08.90, BH02.4117, BH08.39, CH02.4148, CH08.159
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_8AG0614970, gene-QOZ80_8BG0642450
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0297900.1, HORVU.MOREX.r3.3HG0327220.1
Poaceae	Lolium multiflorum	1	gene-QYE76_057192
Poaceae	Oryza coarctata	3	Oco02G027740, Oco15G000510, Oco16G000650
Poaceae	Oryza sativa	2	LOC_Os01g66130.1, LOC_Os08g01900.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G359600, gene-BS78_07G013600
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0600380, Pt_Chr0700676, Pt_Chr0700704
Poaceae	Sporobolus alterniflorus	4	Chr03G021530, Chr08G020670, Chr16G000010, Chr20G013580
Poaceae	Thinopyrum elongatum	4	Tel3E01G618300, Tel3E01G651500, Tel3E01G878100 ... Tel3E01G878200
Poaceae	Triticum dicoccoides	5	gene_TRIDC3AG055610, gene_TRIDC3AG058350 ... gene_TRIDC3AG073760, gene_TRIDC3BG062280, gene_TRIDC3BG085450
Poaceae	Triticum aestivum	7	TraesCS3A02G390200.1, TraesCS3A02G521300.1 ... TraesCS3B02G422200.1, TraesCS3B02G443200.1, TraesCS3B02G591000.1, TraesCS3D02G382500.1, TraesCS3D02G527900.1
Poaceae	Zea mays	3	Zm00001eb145570_P001, Zm00001eb174100_P001 ... Zm00001eb260470_P006
Poaceae	Zoysia japonica	3	nbis-gene-11168, nbis-gene-41408, nbis-gene-51935
Poaceae	Zoysia macrostachya	3	Zma_g22360, Zma_g23507, Zma_g9143
Portulacaceae	Portulaca oleracea	4	evm.TU.LG10.869, evm.TU.LG18.381, evm.TU.LG25.1223 ... evm.TU.LG26.656
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g06870, gene.Posoc08g08720
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_6_RagTag.1819
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17331
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2336
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-11949
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000011l.1113
Rhizophoraceae	Kandelia obovata	1	Maker00007880
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-15470
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-3267
Salicaceae	Populus euphratica	5	populus_peu14468, populus_peu14478, populus_peu23323 ... populus_peu32433, populus_peu32867
Solanaceae	Lycium barbarum	3	gene-LOC132601989, gene-LOC132604584, gene-LOC132626552
Solanaceae	Solanum chilense	3	SOLCI005329600, SOLCI005442400, SOLCI006710000
Solanaceae	Solanum pennellii	2	gene-LOC107007682, gene-LOC107008077
Tamaricaceae	Reaumuria soongarica	1	STRG.4815_chr03_-
Tamaricaceae	Tamarix chinensis	1	TC04G1828
Zosteraceae	Zostera marina	1	Zosma01g09780.v3.1