Basic Information
Locus ID:
evm.TU.LG18.238
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
LON peptidase N-terminal domain and RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 12498821 | 12499861 | + | evm.TU.LG18.238 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 37,890.57 Da | 53.36 | 67.95 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 298 | 335 | 1.77163E-11 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 296 | 339 | 4.3E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 297 | 342 | 1.96E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 270 | 346 | 6.9E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 298 | 335 | 4.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 298 | 336 | 11.058237 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 211 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_021720045.1 | uncharacterized protein LOC110687733 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9R914 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology