Basic Information
Locus ID:
evm.TU.LG18.1850
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 38678690 | 38687053 | - | evm.TU.LG18.1850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.12 | 117,766.32 Da | 75.62 | 57.48 | -1.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06943 | LSD1 zinc finger | 740 | 764 | 3.1E-6 | IPR005735 |
| Pfam | PF06943 | LSD1 zinc finger | 702 | 725 | 7.3E-8 | IPR005735 |
| TIGRFAM | TIGR01053 | LSD1: zinc finger domain, LSD1 subclass | 737 | 764 | 4.4E-5 | IPR005735 |
| TIGRFAM | TIGR01053 | LSD1: zinc finger domain, LSD1 subclass | 699 | 729 | 2.4E-13 | IPR005735 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 415 | - | - |
| Coils | Coil | Coil | 26 | 61 | - | - |
| Coils | Coil | Coil | 628 | 670 | - | - |
| Coils | Coil | Coil | 580 | 625 | - | - |
| Coils | Coil | Coil | 69 | 98 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_010686502.1 | E3 ubiquitin-protein ligase RMA1H1 [Beta vulgaris subsp. vulgaris] | 0 |
| O64425 | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZB14 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology