Basic Information
Locus ID:
evm.TU.LG18.1616
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 36692047 | 36699194 | + | evm.TU.LG18.1616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 66,474.35 Da | 60.38 | 60.19 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 132 | 182 | 7.62546E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 280 | 327 | 1.8E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 201 | 263 | 1.8E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 213 | 3.89E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 270 | 1.08E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 282 | 330 | 3.34E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 557 | 584 | 1.02E-5 | IPR036443 |
| Gene3D | G3DSA:1.20.120.1750 | - | 259 | 514 | 2.0E-84 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 211 | 1.9E-17 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 276 | 337 | 0.061 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 201 | 263 | 5.3E-25 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 128 | 341 | 50.758392 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 176 | 9.199359 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 557 | 584 | 8.015973 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 561 | 580 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 556 | - | - |
| Coils | Coil | Coil | 455 | 475 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010673879.1 | probable E3 ubiquitin-protein ligase ARI8 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMM1 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology