Basic Information
Locus ID:
evm.TU.LG18.1213
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 32074645 | 32085416 | - | evm.TU.LG18.1213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 36,737.49 Da | 53.67 | 93.50 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 137 | 180 | 1.34774E-17 | - |
| Pfam | PF13639 | Ring finger domain | 137 | 180 | 1.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 184 | 1.13E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 189 | 5.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 138 | 179 | 7.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 138 | 180 | 12.858103 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35000.1 | RING/U-box superfamily protein. E3 ligase-like protein induced by chitin oligomers. | 0 |
| RefSeq | XP_021836519.1 | putative RING-H2 finger protein ATL35 [Spinacia oleracea] | 0 |
| O64763 | E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9D7H0 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1213, evm.TU.LG20.674 |