Basic Information
Locus ID:
evm.TU.LG18.1131
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 30695075 | 30705436 | - | evm.TU.LG18.1131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 97,808.11 Da | 39.28 | 76.57 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 411 | 467 | 2.7585E-31 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 476 | 834 | 4.7E-34 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 412 | 468 | 1.8E-11 | IPR023780 |
| Pfam | PF01426 | BAH domain | 144 | 242 | 7.3E-11 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 400 | 468 | 2.58E-15 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 297 | 835 | 3.88E-77 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 73 | 238 | 9.2E-49 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 630 | 801 | 8.5E-224 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 411 | 852 | 8.5E-224 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 281 | 389 | 6.7E-15 | - |
| SMART | SM00298 | chromo_7 | 411 | 470 | 7.2E-12 | IPR000953 |
| SMART | SM00439 | BAH_4 | 134 | 253 | 2.1E-15 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 480 | 832 | 4.5E-32 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 134 | 253 | 17.042194 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 412 | 468 | 14.765701 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 298 | 842 | 44.624218 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 482 | 494 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 435 | 455 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 525 | 539 | 8.8E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 571 | 584 | 8.8E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 299 | 315 | 8.8E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010673524.2 | DNA (cytosine-5)-methyltransferase CMT3 [Beta vulgaris subsp. vulgaris] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R7E9 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_103070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology