Basic Information
Locus ID:
evm.TU.LG17.926
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
C1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 13685120 | 13687913 | - | evm.TU.LG17.926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 57,719.19 Da | 58.49 | 65.33 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 280 | 333 | 7.8E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 10 | 53 | 4.9E-6 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 78 | 156 | 1.88E-6 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 5 | 56 | 9.12E-8 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 243 | 338 | 7.95E-9 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 134 | 224 | 6.54E-8 | - |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 12 | 69 | 8.0875 | IPR002219 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 448 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_016728376.1 | uncharacterized protein LOC107939541 [Gossypium hirsutum] | 0 |
| TrEMBL | A0A5D2PHU5 | Phorbol-ester/DAG-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A08G196000v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |