Basic Information
Locus ID:
evm.TU.LG17.809
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Vacuolar sorting-associated protein 13, N-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 11574528 | 11616661 | + | evm.TU.LG17.809 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 483,484.47 Da | 43.83 | 87.00 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 134 | 375 | 6.4E-68 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1975 | 2125 | 1.1E-11 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4213 | 4285 | 1.4E-5 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2201 | 2348 | 8.5E-9 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3309 | 3478 | 1.3E-14 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 555 | 778 | 9.1E-30 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 108 | 9.8E-29 | IPR026854 |
| SUPERFAMILY | SSF50729 | PH domain-like | 798 | 913 | 1.23E-5 | - |
| SMART | SM00233 | PH_update | 796 | 911 | 0.0099 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 795 | 909 | 6.7639 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_019105061.2 | uncharacterized protein LOC104892878 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CD77 | PH domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g105600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology