Basic Information
Locus ID:
evm.TU.LG17.722
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 9733102 | 9751989 | + | evm.TU.LG17.722 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 72,976.73 Da | 42.43 | 91.65 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01080 | NAD_bind_m-THF_DH_Cyclohyd | 521 | 663 | 8.09288E-67 | IPR020631 |
| CDD | cd06661 | GGCT_like | 19 | 129 | 9.09096E-13 | IPR013024 |
| Pfam | PF02882 | Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain | 566 | 664 | 1.5E-37 | IPR020631 |
| Pfam | PF00763 | Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain | 415 | 526 | 6.0E-37 | IPR020630 |
| Pfam | PF06094 | Gamma-glutamyl cyclotransferase, AIG2-like | 19 | 136 | 3.9E-18 | IPR009288 |
| Pfam | PF00069 | Protein kinase domain | 298 | 372 | 4.9E-10 | IPR000719 |
| Pfam | PF02882 | Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain | 529 | 565 | 2.7E-5 | IPR020631 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 307 | 371 | 1.11E-15 | IPR011009 |
| SUPERFAMILY | SSF53223 | Aminoacid dehydrogenase-like, N-terminal domain | 415 | 527 | 1.53E-35 | - |
| SUPERFAMILY | SSF110857 | Gamma-glutamyl cyclotransferase-like | 16 | 137 | 4.05E-24 | IPR036568 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 528 | 662 | 5.25E-31 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 564 | 647 | 6.9E-31 | - |
| Gene3D | G3DSA:3.10.490.10 | - | 6 | 163 | 5.3E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 291 | 418 | 3.5E-15 | - |
| Gene3D | G3DSA:3.40.50.10860 | Leucine Dehydrogenase, chain A, domain 1 | 419 | 563 | 1.4E-47 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 109 | 429 | 11.227356 | IPR000719 |
| ProSitePatterns | PS00767 | Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. | 643 | 651 | - | IPR020867 |
| ProSitePatterns | PS00766 | Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. | 481 | 506 | - | IPR020867 |
| PRINTS | PR00085 | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 515 | 536 | 3.6E-30 | IPR000672 |
| PRINTS | PR00085 | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 439 | 461 | 3.6E-30 | IPR000672 |
| PRINTS | PR00085 | Tetrahydrofolate dehydrogenase/cyclohydrolase family signature | 480 | 507 | 3.6E-30 | IPR000672 |
| Hamap | MF_01576 | Bifunctional protein FolD [folD]. | 408 | 666 | 27.923544 | IPR000672 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 187 | - | - |
| Coils | Coil | Coil | 652 | 668 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12290.1 | Amino acid dehydrogenase family protein. | 0 |
| RefSeq | XP_021765646.1 | bifunctional protein FolD 2-like [Chenopodium quinoa] | 0 |
| Q9LHH7 | Bifunctional protein FolD 2 OS=Arabidopsis thaliana OX=3702 GN=FOLD2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZVP8 | methenyltetrahydrofolate cyclohydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26685 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8288 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g029500 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg22035 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15962 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008581 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62978, Sgl63077, Sgl67686 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000018700, gene:ENSEOMG00000050632 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0016750, CQ.Regalona.r1.2BG0018550 |
| Apiaceae | Apium graveolens | 2 | Ag1G00307, Ag2G02765 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012130 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711370, gene-LOC103720334 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G23640 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G12650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021417m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g10790.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g052440.2N, BniB02g029910.2N, BniB07g026210.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g05620 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.43 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030980 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.3234, BH07.3062, CH05.1311, CH07.3139 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0143460, gene-QOZ80_2BG0198860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0609800.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco03G019910 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g48680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G256000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203518, Pt_Chr0203545 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G003610, Chr09G021560, Chr15G005030 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G515000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG043040, gene_TRIDC6BG050460 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G281700.1.cds1, TraesCS6B02G310400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb189290_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22016, nbis-gene-8904 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14285, Zma_g17034 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2380, evm.TU.LG06.1130, evm.TU.LG16.1561 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g10320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.332 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18933 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6547 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6962 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000028l.85 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010851 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20253 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20147 |
| Salicaceae | Populus euphratica | 2 | populus_peu01846, populus_peu35974 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632885 |
| Solanaceae | Solanum chilense | 1 | SOLCI003997300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012543 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1999_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0017 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21500.v3.1 |