Basic Information
Locus ID:
evm.TU.LG17.567
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 7286949 | 7298038 | + | evm.TU.LG17.567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 80,380.07 Da | 43.62 | 88.75 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 74 | 282 | 7.21114E-128 | - |
| CDD | cd18794 | SF2_C_RecQ | 283 | 419 | 2.68444E-72 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 314 | 409 | 1.2E-16 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 608 | 668 | 3.0E-7 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 422 | 477 | 1.6E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 94 | 262 | 7.4E-20 | IPR011545 |
| Pfam | PF09382 | RQC domain | 484 | 587 | 2.1E-6 | IPR018982 |
| SUPERFAMILY | SSF47819 | HRDC-like | 594 | 671 | 7.06E-6 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 131 | 425 | 1.32E-58 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 602 | 671 | 6.1E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 49 | 282 | 4.1E-90 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 483 | 584 | 2.8E-24 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 283 | 480 | 3.7E-67 | IPR027417 |
| SMART | SM00956 | RQC_2 | 487 | 584 | 0.0029 | IPR018982 |
| SMART | SM00487 | ultradead3 | 88 | 291 | 3.0E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 329 | 410 | 1.7E-28 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 85 | 517 | 3.7E-164 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 100 | 275 | 24.441961 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 599 | 678 | 12.678377 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 300 | 449 | 20.821266 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 695 | - | - |
| Coils | Coil | Coil | 5 | 39 | - | - |
| Coils | Coil | Coil | 515 | 535 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021862388.1 | mediator of RNA polymerase II transcription subunit 34 [Spinacia oleracea] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YKK4 | ATP-dependent DNA helicase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology