Basic Information
Locus ID:
evm.TU.LG17.1521
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 38281691 | 38303358 | - | evm.TU.LG17.1521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 69,740.36 Da | 30.77 | 97.28 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 501 | 597 | 5.02986E-29 | - |
| CDD | cd00030 | C2 | 307 | 425 | 9.00497E-26 | - |
| Pfam | PF00168 | C2 domain | 305 | 425 | 1.0E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 112 | 289 | 3.6E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 499 | 591 | 3.8E-26 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 303 | 450 | 2.85E-28 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 498 | 616 | 2.56E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 301 | 459 | 9.7E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 482 | 617 | 1.8E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 500 | 598 | 4.0E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 306 | 422 | 2.1E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 284 | 423 | 20.09421 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 480 | 599 | 22.487482 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 110 | 292 | 30.495529 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 516 | 528 | 1.8E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 564 | 572 | 1.8E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 542 | 555 | 1.8E-7 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 49 | - | - |
| Coils | Coil | Coil | 474 | 494 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021769371.1 | synaptotagmin-5-like isoform X1 [Chenopodium quinoa] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EDV8 | Synaptotagmin-5 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology