Basic Information
Locus ID:
evm.TU.LG17.1288
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 34569689 | 34584386 | + | evm.TU.LG17.1288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 114,674.25 Da | 30.48 | 83.29 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 46 | 322 | 5.8954E-176 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 612 | 823 | 4.3E-46 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 364 | 456 | 1.4E-20 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 47 | 359 | 7.2E-96 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 905 | 1011 | 1.4E-12 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 467 | 1015 | 5.96E-139 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 363 | 457 | 2.65E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 35 | 361 | 1.42E-109 | IPR011330 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 406 | 461 | 4.1E-22 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 328 | 405 | 6.0E-32 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 892 | 1018 | 1.5E-35 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 474 | 585 | 1.5E-28 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 606 | 871 | 1.6E-91 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 46 | 327 | 2.2E-120 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 364 | 438 | 3.2E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021736050.1 | probable alpha-mannosidase At5g13980 [Chenopodium quinoa] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZIS1 | Alpha-mannosidase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology