Basic Information
Locus ID:
evm.TU.LG17.1286
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 34514814 | 34547476 | + | evm.TU.LG17.1286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 111,828.23 Da | 31.55 | 88.59 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 316 | 0.0 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 889 | 996 | 2.0E-10 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 633 | 807 | 5.1E-45 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 359 | 450 | 8.1E-19 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 353 | 9.8E-94 | IPR000602 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 457 | 998 | 4.87E-137 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 452 | 1.14E-26 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 355 | 7.78E-109 | IPR011330 |
| Gene3D | G3DSA:2.70.98.30 | - | 610 | 855 | 2.2E-92 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 876 | 999 | 3.1E-34 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 321 | 1.9E-121 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 1.9E-29 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 456 | 3.5E-19 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 463 | 574 | 9.7E-26 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 1.4E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010682958.2 | alpha-mannosidase At3g26720 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CJX7 | Alpha-mannosidase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology