Basic Information
Locus ID:
evm.TU.LG17.104
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 1079295 | 1083593 | - | evm.TU.LG17.104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 43,478.42 Da | 55.87 | 83.04 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 344 | 387 | 5.62183E-17 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 28 | 101 | 3.2E-13 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 344 | 387 | 4.5E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 339 | 390 | 1.88E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 316 | 392 | 5.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 345 | 386 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 345 | 387 | 12.961374 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010676294.2 | RING-H2 finger protein ATL22 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9FRB5 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology