Basic Information
Locus ID:
evm.TU.LG16.821
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 12252135 | 12255143 | + | evm.TU.LG16.821 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 65,316.92 Da | 25.59 | 91.43 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 408 | 590 | 8.90795E-89 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 49 | 210 | 3.22392E-90 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 46 | 214 | 2.4E-35 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 243 | 360 | 1.0E-20 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 453 | 578 | 1.2E-14 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 46 | 221 | 8.95E-44 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 408 | 602 | 1.12E-40 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 238 | 385 | 1.7E-32 | IPR029035 |
| Gene3D | G3DSA:3.40.50.1220 | - | 233 | 395 | 3.9E-42 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 402 | 589 | 3.9E-54 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 42 | 219 | 1.3E-60 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 40 | 602 | 9.5E-212 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 467 | 486 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_021852105.1 | pyruvate decarboxylase 2 [Spinacia oleracea] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QMI0 | pyruvate decarboxylase OS=Spinacia oleracea OX=3562 GN=SOVF_162420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology