Basic Information
Locus ID:
evm.TU.LG16.645
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 8750897 | 8763934 | - | evm.TU.LG16.645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 139,069.27 Da | 57.68 | 71.98 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 785 | 840 | 1.67652E-30 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 799 | 839 | 1.8E-11 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 850 | 1206 | 4.8E-39 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 780 | 845 | 1.29E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 678 | 1206 | 2.05E-79 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 681 | 1223 | 3.3E-239 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 462 | 627 | 2.2E-44 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1005 | 1172 | 3.3E-239 | - |
| SMART | SM00298 | chromo_7 | 785 | 844 | 4.1E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 526 | 638 | 1.4E-16 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 854 | 1203 | 4.5E-32 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 786 | 839 | 12.829001 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 526 | 642 | 15.774133 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 679 | 1213 | 47.004459 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 809 | 829 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 856 | 868 | - | IPR018117 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1188 | 1206 | - | IPR031303 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 945 | 958 | 2.4E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 680 | 696 | 2.4E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 899 | 913 | 2.4E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 355 | - | - |
| Coils | Coil | Coil | 408 | 428 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021765549.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RVU1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology