Basic Information
Locus ID:
evm.TU.LG16.578
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 7499106 | 7500146 | + | evm.TU.LG16.578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 37,675.67 Da | 56.53 | 71.79 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 155 | 198 | 1.16635E-15 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 9.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 136 | 211 | 7.83E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 205 | 3.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 4.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.489278 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 304 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017972774.1 | PREDICTED: E3 ubiquitin-protein ligase Os04g0590900 [Theobroma cacao] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A3C5G6 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00012180pilonHSYRG00004 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology