Basic Information
Locus ID:
evm.TU.LG16.484
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 5871367 | 5874634 | - | evm.TU.LG16.484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 82,117.39 Da | 49.14 | 67.58 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 54 | 6.1E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 87 | 3.27E-10 | IPR036047 |
| SUPERFAMILY | SSF58113 | Apolipoprotein A-I | 477 | 576 | 8.37E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 54 | 1.3E-5 | - |
| SMART | SM00256 | fbox_2 | 18 | 58 | 4.1E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 114 | 324 | 2.6E-16 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 57 | 9.312009 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 715 | - | - |
| Coils | Coil | Coil | 483 | 562 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021848420.1 | F-box/kelch-repeat protein At3g06240-like [Spinacia oleracea] | 0 |
| Q9LPW2 | Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana OX=3702 GN=At1g12870 PE=4 SV=2 | 0 | |
| TrEMBL | A0A7C8YGP6 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag10G01150 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2813 |
| Portulacaceae | Portulaca oleracea | 14 | evm.TU.LG04.2967, evm.TU.LG04.3108, evm.TU.LG10.771 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.19897_chr11_+ |