Basic Information
Locus ID:
evm.TU.LG16.1666
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 40470976 | 40472034 | + | evm.TU.LG16.1666 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 39,486.64 Da | 52.99 | 81.48 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 180 | 211 | 0.066 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 302 | 0.048 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 48 | 310 | 6.41E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 352 | 2.2E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 173 | 211 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 125 | 170 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 77 | 118 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 302 | 6.4E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 305 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 220 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 305 | 10.608706 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 289 | 303 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021721171.1 | WD repeat-containing protein LWD1-like [Chenopodium quinoa] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MMM7 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology