Basic Information
Locus ID:
evm.TU.LG16.1442
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 37772067 | 37775699 | + | evm.TU.LG16.1442 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 55,664.59 Da | 44.03 | 88.26 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 278 | 4.2E-10 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 208 | 4.1E-17 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 2.9E-7 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 377 | 1.0E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 21 | 278 | 4.4E-53 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 148 | 297 | 7.9E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 145 | 2.3E-33 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 308 | 389 | 1.6E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 370 | 8.8E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.048 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 284 | 1200.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 1.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 2.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.003 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 5.9E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.922203 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.169178 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.12851 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.27704 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.99171 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.3689 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.435407 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.905817 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 207 | 11.877333 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.940542 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.965 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021755342.1 | E3 ubiquitin-protein ligase XBAT32-like [Chenopodium quinoa] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QNZ5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_158010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology