Basic Information
Locus ID:
evm.TU.LG16.1375
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 36629390 | 36635763 | - | evm.TU.LG16.1375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 156,915.95 Da | 56.40 | 63.51 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 9 | 50 | 8.1E-15 | IPR014977 |
| Pfam | PF08879 | WRC | 420 | 458 | 1.7E-16 | IPR014977 |
| Pfam | PF08879 | WRC | 288 | 328 | 5.2E-7 | IPR014977 |
| Pfam | PF08879 | WRC | 162 | 200 | 6.0E-7 | IPR014977 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1222 | 1329 | 4.3E-9 | IPR003347 |
| Pfam | PF08879 | WRC | 110 | 148 | 5.1E-11 | IPR014977 |
| Pfam | PF08879 | WRC | 223 | 256 | 5.4E-14 | IPR014977 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 921 | 1359 | 7.55E-19 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 903 | 1355 | 2.9E-95 | - |
| SMART | SM00558 | cupin_9 | 1019 | 1346 | 2.1E-35 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 8 | 53 | 19.555185 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 418 | 462 | 20.544964 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 287 | 331 | 12.864592 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 222 | 266 | 17.46821 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 108 | 152 | 16.700941 | IPR014977 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 607 | 652 | 8.771522 | IPR001841 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 161 | 207 | 12.388884 | IPR014977 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1038 | 1346 | 18.34643 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1172 | 1220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1184 | 1205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 171 | - | - |
| Coils | Coil | Coil | 348 | 391 | - | - |
| Coils | Coil | Coil | 395 | 415 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21430.1 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase. | 0 |
| RefSeq | XP_021719519.1 | uncharacterized protein LOC110687212 isoform X1 [Chenopodium quinoa] | 0 |
| Q8H1S7 | Lysine-specific demethylase JMJ28 OS=Arabidopsis thaliana OX=3702 GN=JMJ28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RDU2 | WRC domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_078740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology