Basic Information
Locus ID:
evm.TU.LG15.968
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 11322113 | 11330725 | + | evm.TU.LG15.968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 50,569.52 Da | 45.42 | 85.99 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00063 | Myosin head (motor domain) | 64 | 444 | 3.4E-149 | IPR001609 |
| Pfam | PF02736 | Myosin N-terminal SH3-like domain | 11 | 47 | 4.4E-12 | IPR004009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 13 | 444 | 8.5E-155 | IPR027417 |
| Gene3D | G3DSA:2.30.30.360 | - | 11 | 55 | 7.4E-6 | IPR008989 |
| Gene3D | G3DSA:3.40.850.10 | Kinesin motor domain | 65 | 438 | 3.4E-154 | IPR036961 |
| Gene3D | G3DSA:1.10.10.820 | - | 252 | 310 | 3.4E-154 | - |
| Gene3D | G3DSA:1.20.120.720 | Myosin VI head, motor domain, U50 subdomain | 312 | 422 | 3.4E-154 | - |
| SMART | SM00242 | MYSc_2a | 56 | 456 | 4.8E-100 | IPR001609 |
| ProSiteProfiles | PS51844 | Myosin N-terminal SH3-like domain profile. | 8 | 57 | 17.726637 | IPR004009 |
| ProSiteProfiles | PS51456 | Myosin motor domain profile. | 62 | 456 | 153.556488 | IPR001609 |
| PRINTS | PR00193 | Myosin heavy chain signature | 196 | 223 | 2.8E-40 | IPR001609 |
| PRINTS | PR00193 | Myosin heavy chain signature | 149 | 174 | 2.8E-40 | IPR001609 |
| PRINTS | PR00193 | Myosin heavy chain signature | 92 | 111 | 2.8E-40 | IPR001609 |
| PRINTS | PR00193 | Myosin heavy chain signature | 429 | 456 | 2.8E-40 | IPR001609 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43900.1 | myosin 2. Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner. | 0 |
| RefSeq | XP_010687310.1 | myosin-6 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LKB9 | Myosin-6 OS=Arabidopsis thaliana OX=3702 GN=XI-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XKB1 | Putative Gag protease polyprotein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111621pilonHSYRG00385 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033730 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl21469, Sgl32083, Sgl32764, Sgl38048, Sgl47658, Sgl73332 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046696 |
| Apiaceae | Apium graveolens | 1 | Ag10G00690 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G001510 |
| Brassicaceae | Brassica nigra | 2 | BniB05g004830.2N, BniB06g055190.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g23920 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013377 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18016 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.2141, BH01.50 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009586, gene-QYE76_028916 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G022250, Chr0G030460, Chr12G037710, Chr13G016450 |
| Poaceae | Zea mays | 1 | Zm00001eb343050_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15709, nbis-gene-16142, nbis-gene-29400 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG15.968, evm.TU.LG16.1283, evm.TU.LG20.1277 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.974 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-21221, nbisL1-mrna-26239, nbisL1-mrna-27601 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7005 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10312, nbisL1-mrna-18336, nbisL1-mrna-7266 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.481 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009784 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5074, nbisL1-mrna-5075 |
| Salicaceae | Populus euphratica | 2 | populus_peu11888, populus_peu37973 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635994 |