Basic Information
Locus ID:
evm.TU.LG15.541
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 5360135 | 5364357 | + | evm.TU.LG15.541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 52,528.52 Da | 54.98 | 85.29 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 247 | 295 | 2.31376E-15 | - |
| Pfam | PF12906 | RING-variant domain | 247 | 294 | 7.9E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 298 | 1.26E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 302 | 2.1E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 246 | 295 | 6.4E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 239 | 301 | 19.766336 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 91 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021770597.1 | uncharacterized protein LOC110734758 isoform X1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C8ZSE4 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology