Basic Information
Locus ID:
evm.TU.LG15.211
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2001848 | 2010500 | + | evm.TU.LG15.211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 81,499.04 Da | 50.52 | 75.53 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 56 | 211 | 6.75961E-30 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 364 | 421 | 6.3E-11 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 90 | 165 | 8.6E-9 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 17 | 361 | 2.0E-111 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 422 | 497 | 8.2E-7 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 13 | 210 | 9.4E-54 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 212 | 361 | 7.32E-65 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 364 | 490 | 8.24E-38 | IPR011068 |
| Gene3D | G3DSA:1.10.1410.10 | - | 17 | 359 | 3.9E-159 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 49 | 205 | 3.9E-159 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 364 | 479 | 6.0E-28 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 534 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021776422.1 | LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Chenopodium quinoa] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N4A6 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology