Basic Information
Locus ID:
evm.TU.LG15.1499
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 25963540 | 25977400 | - | evm.TU.LG15.1499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 102,151.77 Da | 30.73 | 86.94 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 17 | 297 | 5.54353E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 133 | 171 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 127 | 7.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 4.7E-6 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 319 | 763 | 1.9E-164 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 5.9E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 297 | 1.65E-78 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 227 | 500 | 1.43E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 300 | 4.2E-113 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 590 | 798 | 8.7E-85 | - |
| SMART | SM00320 | WD40_4 | 4 | 43 | 0.87 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 215 | 5.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 171 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 8.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 3.3E-12 | IPR001680 |
| PIRSF | PIRSF005567 | Beta'-COP | 2 | 882 | 0.0 | IPR016453 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 224 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 256 | 12.710129 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 266 | 15.855363 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 180 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 127 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 127 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 172 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 52 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 218 | 8.887423 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 1.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 857 | 872 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.1 | Coatomer, beta' subunit. | 0 |
| RefSeq | XP_048491854.1 | coatomer subunit beta'-1 isoform X4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C827 | Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZDE5 | Coatomer subunit beta' OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology