Basic Information
Locus ID:
evm.TU.LG15.1433
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 22584285 | 22590009 | - | evm.TU.LG15.1433 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 165,557.13 Da | 37.26 | 106.09 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 611 | 811 | 5.38192E-109 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1232 | 1452 | 1.04628E-122 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 915 | 1209 | 2.52424E-95 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 298 | 585 | 3.02042E-100 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 917 | 1158 | 5.5E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1251 | 1399 | 2.2E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 297 | 564 | 1.7E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 629 | 763 | 4.9E-21 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 614 | 833 | 3.18E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1226 | 1461 | 1.22E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 915 | 1215 | 1.44E-55 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 288 | 596 | 1.22E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1217 | 1470 | 3.1E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 599 | 844 | 2.9E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 271 | 593 | 3.7E-45 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 880 | 1215 | 3.7E-64 | IPR036640 |
| SMART | SM00382 | AAA_5 | 638 | 811 | 1.2E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1260 | 1445 | 2.2E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 297 | 577 | 29.76832 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1234 | 1468 | 19.014399 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 917 | 1197 | 39.007221 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 611 | 834 | 22.649168 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 736 | 750 | - | IPR017871 |
| Coils | Coil | Coil | 458 | 478 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859169.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology