Basic Information
Locus ID:
evm.TU.LG15.1394
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 21139546 | 21151571 | + | evm.TU.LG15.1394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 123,732.86 Da | 42.48 | 82.64 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 491 | 0.0049 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 915 | 948 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 835 | 1093 | 3.3E-34 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 352 | 671 | 3.66E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 578 | 703 | 1.9E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 769 | 1099 | 7.5E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 548 | 3.0E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1001 | 1042 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 866 | 906 | 0.35 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.4E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 863 | 74.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 7.5E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.1E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 582 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 909 | 948 | 2.2E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 916 | 957 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 916 | 948 | 9.915599 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.283856 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.814281 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 479 | 493 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1095 | 1127 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.2 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_028062897.1 | topless-related protein 4-like isoform X1 [Camellia sinensis] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4S4EQZ5 | Topless-related protein 4 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017481 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology