Basic Information
Locus ID:
evm.TU.LG15.1321
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Sister chromatid cohesion protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 19365201 | 19387721 | - | evm.TU.LG15.1321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 59,223.34 Da | 42.66 | 77.27 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 456 | 498 | 3.91E-7 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 24 | 247 | 9.79E-9 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 5 | 311 | 1.7E-6 | IPR011989 |
| Gene3D | G3DSA:2.30.30.140 | - | 450 | 504 | 1.4E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 398 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15940.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_010691596.1 | sister chromatid cohesion protein PDS5 homolog E isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9S9P0 | Sister chromatid cohesion protein PDS5 homolog E OS=Arabidopsis thaliana OX=3702 GN=PDS5E PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RUR0 | Tudor domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology