Basic Information
Locus ID:
evm.TU.LG15.1059
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ER-associated misfolded protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 12877806 | 12878931 | - | evm.TU.LG15.1059 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 39,252.87 Da | 57.71 | 69.91 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 96 | 220 | 1.1E-36 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 85 | 192 | 3.0E-25 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 193 | 223 | 1.4E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_048496482.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q19584 | Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans OX=6239 GN=ufd-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LM26 | Ubiquitin fusion degradation protein 1 homolog OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology