Basic Information
Locus ID:
evm.TU.LG15.1016
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 12009625 | 12011688 | + | evm.TU.LG15.1016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 74,813.39 Da | 40.27 | 104.69 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 541 | 580 | 6.4E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 382 | 441 | 3.1E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 120 | 180 | 3.1E-9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 97 | 118 | 0.17 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 3 | 238 | 5.78E-52 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 246 | 355 | 1.49E-19 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 337 | 586 | 2.04E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 358 | 7.8E-40 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 359 | 622 | 2.7E-74 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 189 | 4.6E-57 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 95 | 124 | 330.0 | - |
| SMART | SM00369 | LRR_typ_2 | 567 | 593 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 143 | 167 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 428 | 452 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 404 | 427 | 32.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 167 | 187 | 52.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 543 | 569 | 78.0 | - |
| SMART | SM00369 | LRR_typ_2 | 543 | 566 | 67.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 380 | 409 | 450.0 | - |
| SMART | SM00369 | LRR_typ_2 | 95 | 119 | 8.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 428 | 454 | 40.0 | - |
| SMART | SM00369 | LRR_typ_2 | 380 | 403 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 23 | 47 | 180.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 382 | 404 | 7.165205 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 406 | 429 | 7.026593 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 98 | 111 | 4.7E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 567 | 580 | 4.7E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_021741316.1 | leucine-rich repeat receptor protein kinase MSP1-like [Chenopodium quinoa] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803MM93 | LRRNT_2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |