Basic Information
Locus ID:
evm.TU.LG14.985
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 29782659 | 29791076 | - | evm.TU.LG14.985 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 144,456.06 Da | 37.08 | 99.26 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 509 | 567 | 1.1E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 911 | 970 | 1.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 764 | 824 | 5.8E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 293 | 352 | 6.4E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 583 | 639 | 1.3E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 838 | 893 | 2.5E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1126 | 1185 | 1.0E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 220 | 276 | 6.8E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 79 | 119 | 2.8E-7 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 696 | 737 | 0.0076 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 126 | 449 | 5.65E-64 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 356 | 674 | 1.11E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 974 | 1290 | 1.22E-56 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 744 | 1067 | 9.42E-65 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 896 | 1001 | 9.0E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 276 | 413 | 9.7E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 698 | 808 | 8.1E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 275 | 2.2E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1010 | 1293 | 8.2E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 414 | 675 | 9.9E-79 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 78 | 191 | 8.2E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 809 | 895 | 4.8E-23 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 860 | 886 | 130.0 | - |
| SMART | SM00369 | LRR_typ_2 | 530 | 554 | 5.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 626 | 649 | 140.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 339 | 365 | 61.0 | - |
| SMART | SM00369 | LRR_typ_2 | 957 | 981 | 54.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 787 | 820 | 780.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1172 | 1194 | 160.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 530 | 559 | 250.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 242 | 271 | 71.0 | - |
| SMART | SM00369 | LRR_typ_2 | 387 | 411 | 8.7 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 1124 | 1150 | 170.0 | - |
| SMART | SM00369 | LRR_typ_2 | 787 | 811 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1244 | 1267 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 763 | 786 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 909 | 933 | 61.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 957 | 983 | 60.0 | - |
| SMART | SM00369 | LRR_typ_2 | 860 | 883 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 339 | 362 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1148 | 1172 | 7.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 242 | 266 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 315 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1005 | 1029 | 17.0 | IPR003591 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 1244 | 1257 | 7.7E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 629 | 642 | 7.7E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_017643785.1 | PREDICTED: receptor protein kinase CLAVATA1-like [Gossypium arboreum] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A7C9AFS3 | LRRNT_2 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22125, gene_22126 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011420 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41641, Sgl46440 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011472 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0003080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049220 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G21477 |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq01G0192, Ceq01G0193, Ceq01G0196, Ceq03G0864 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G0214, Cgl01G0215, Cgl03G0944 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1770, evm.TU.LG14.985 |