Basic Information
Locus ID:
evm.TU.LG14.967
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Flavodoxin-like fold
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 29230788 | 29240318 | + | evm.TU.LG14.967 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 48,444.59 Da | 38.30 | 74.90 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00266 | MADS_SRF_like | 7 | 89 | 7.6895E-26 | IPR033897 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 15 | 55 | 3.5E-16 | IPR002100 |
| Pfam | PF03358 | NADPH-dependent FMN reductase | 254 | 380 | 7.8E-10 | IPR005025 |
| SUPERFAMILY | SSF55455 | SRF-like | 7 | 101 | 4.97E-21 | IPR036879 |
| SUPERFAMILY | SSF52218 | Flavoproteins | 241 | 436 | 9.04E-56 | IPR029039 |
| Gene3D | G3DSA:3.40.1810.10 | - | 17 | 101 | 4.2E-15 | IPR036879 |
| Gene3D | G3DSA:3.40.50.360 | - | 239 | 437 | 5.5E-77 | IPR029039 |
| SMART | SM00432 | madsneu2 | 5 | 64 | 6.8E-13 | IPR002100 |
| TIGRFAM | TIGR01755 | flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV | 243 | 435 | 1.2E-63 | IPR010089 |
| ProSiteProfiles | PS50902 | Flavodoxin-like domain profile. | 241 | 428 | 19.181534 | IPR008254 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 5 | 53 | 16.441545 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 7 | 27 | 1.4E-7 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 27 | 42 | 1.4E-7 | IPR002100 |
| Coils | Coil | Coil | 142 | 162 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific)
GO:0000987 (cis-regulatory region sequence-specific DNA binding)
GO:0003677 (DNA binding)
GO:0003955 (NAD(P)H dehydrogenase (quinone) activity)
GO:0010181 (FMN binding)
GO:0016491 (oxidoreductase activity)
GO:0046983 (protein dimerization activity)
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54500.1 | flavodoxin-like quinone reductase 1. Encodes a flavin mononucleotide-binding flavodoxin-like quinone reductase that is a primary auxin-response gene. | 0 |
| RefSeq | XP_016545647.1 | probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Capsicum annuum] | 0 |
| Q9LSQ5 | NAD(P)H dehydrogenase (quinone) FQR1 OS=Arabidopsis thaliana OX=3702 GN=FQR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8EEK0 | NAD(P)H dehydrogenase (quinone) OS=Capsicum annuum OX=4072 GN=LOC107845703 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology