Basic Information
Locus ID:
evm.TU.LG14.863
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 27088441 | 27098719 | - | evm.TU.LG14.863 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 110,993.29 Da | 59.77 | 78.17 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 264 | 374 | 1.1E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 781 | 813 | 2.5E-4 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 752 | 816 | 1.65E-9 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 884 | 962 | 5.29E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 142 | 400 | 1.3E-20 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 145 | 405 | 8.4E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 886 | 971 | 2.5E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 749 | 826 | 1.9E-7 | - |
| SMART | SM00358 | DRBM_3 | 886 | 954 | 0.0068 | IPR014720 |
| SMART | SM00577 | forpap2 | 207 | 383 | 5.5E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 753 | 817 | 3.6E-10 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 148 | 396 | 15.91938 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 885 | 955 | 11.479855 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 752 | 818 | 12.548012 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 1003 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 739 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 570 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010686545.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZZN2 | protein-serine/threonine phosphatase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology