Basic Information
Locus ID:
evm.TU.LG14.287
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 11103912 | 11114622 | + | evm.TU.LG14.287 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 64,450.02 Da | 42.00 | 94.52 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 409 | 539 | 2.74754E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 200 | 398 | 3.81792E-135 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 422 | 530 | 1.2E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 221 | 382 | 2.0E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 265 | 550 | 9.07E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 186 | 403 | 1.0E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 404 | 569 | 1.7E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 215 | 412 | 5.0E-58 | IPR014001 |
| SMART | SM00490 | helicmild6 | 449 | 530 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 227 | 397 | 29.723377 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 408 | 569 | 25.905235 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 196 | 224 | 10.40907 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 343 | 351 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_009764703.1 | PREDICTED: eukaryotic initiation factor 4A-15 isoform X1 [Nicotiana sylvestris] | 0 |
| Q40468 | Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZH22 | RNA helicase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology