Basic Information
Locus ID:
evm.TU.LG14.1822
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
U3 small nucleolar RNA-associated protein 18 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 40531863 | 40536432 | - | evm.TU.LG14.1822 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 83,147.75 Da | 38.53 | 82.61 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 338 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 181 | 464 | 8.85E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 158 | 468 | 2.2E-90 | IPR015943 |
| SMART | SM00320 | WD40_4 | 300 | 338 | 4.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 208 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 55.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 0.79 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 306 | 347 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 306 | 341 | 9.625601 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 325 | 339 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 68 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14050.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021733931.1 | U3 small nucleolar RNA-associated protein 18 homolog [Chenopodium quinoa] | 0 |
| Q9FMU5 | U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DU53 | U3 small nucleolar RNA-associated protein 18 homolog OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 14 | gene_13821, gene_13822, gene_13823, gene_13824, gene_13825 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31036, Sbi_jg58246 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25853 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004674 |
| Apiaceae | Apium graveolens | 1 | Ag7G00585 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G00345 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG01.2683, evm.TU.LG01.2686, evm.TU.LG03.2322 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.841 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-14516, nbisL1-mrna-25177, nbisL1-mrna-25181 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20286 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12437, nbisL1-mrna-5011 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.2 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008688 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-860 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8500 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623196 |
| Solanaceae | Solanum chilense | 1 | SOLCI005645400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009092 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19339_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2341 |