Basic Information
Locus ID:
evm.TU.LG14.1771
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 40125221 | 40133904 | + | evm.TU.LG14.1771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 78,504.94 Da | 51.62 | 55.94 | -1.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02042 | RWP-RK domain | 511 | 558 | 9.4E-21 | IPR003035 |
| Pfam | PF11523 | Protein of unknown function (DUF3223) | 112 | 184 | 4.6E-23 | - |
| Gene3D | G3DSA:3.10.450.40 | - | 88 | 187 | 1.9E-26 | - |
| ProSiteProfiles | PS51519 | RWP-RK domain profile. | 484 | 579 | 16.631115 | IPR003035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 245 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62440.1 | Protein of unknown function (DUF3223). Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. | 0 |
| RefSeq | XP_021733850.1 | protein EMBRYO DEFECTIVE 514-like [Chenopodium quinoa] | 0 |
| Q8L557 | Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0DZQ0 | RWP-RK domain-containing protein OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR20442 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology