Basic Information
Locus ID:
evm.TU.LG14.1738
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 39804621 | 39805235 | + | evm.TU.LG14.1738 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 19,844.08 Da | 50.30 | 71.28 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 126 | 167 | 2.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 170 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 172 | 2.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 166 | 8.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 167 | 12.799091 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29840.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008241221.1 | PREDICTED: uncharacterized protein LOC103339666 [Prunus mume] | 0 |
| Q9SPL2 | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251N8L1 | RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G084100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2579, evm.TU.LG01.2604, evm.TU.LG01.2609 ... |