halophFGD

Basic Information

Locus ID: evm.TU.LG14.1673

Species & Taxonomic ID: Portulaca oleracea & 46147

Genome Assembly: GWHCBIU00000000

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr14	39290369	39293474	+	evm.TU.LG14.1673

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.91	75,294.30 Da	43.24	83.18	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	475	567	3.7E-9	IPR006527
Pfam	PF07734	F-box associated	242	338	3.2E-8	IPR006527
Pfam	PF00646	F-box domain	400	422	0.0042	IPR001810
Pfam	PF00646	F-box domain	31	69	8.2E-12	IPR001810
SUPERFAMILY	SSF81383	F-box domain	25	110	2.75E-16	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	25	71	4.2E-10	-
SMART	SM00256	fbox_2	33	73	5.4E-11	IPR001810
SMART	SM00256	fbox_2	401	431	66.0	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	153	345	2.6E-20	IPR017451
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	424	609	1.7E-12	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	27	74	12.438348	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G47790.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_021733689.1	F-box protein CPR30-like [Chenopodium quinoa]
Swiss-Prot	Q9FZF8	Putative F-box protein At1g47790 OS=Arabidopsis thaliana OX=3702 GN=At1g47790 PE=4 SV=1
TrEMBL	A0A803MXI1	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	29	gene_12224, gene_12225, gene_12226, gene_12227, gene_12228 ... gene_12833, gene_13687, gene_13691, gene_13692, gene_13693, gene_13694, gene_13696, gene_13697, gene_13698, gene_13699, gene_13716, gene_13748, gene_13894, gene_13895, gene_19546, gene_19554, gene_19555, gene_22758, gene_5204, gene_7945, gene_7946, gene_8690, gene_8691, gene_8693
Amaranthaceae	Atriplex hortensis	24	Ah000678, Ah000681, Ah000683, Ah000684, Ah000689, Ah000693 ... Ah000696, Ah000697, Ah000700, Ah000701, Ah000705, Ah001044, Ah001150, Ah001198, Ah001199, Ah001205, Ah001207, Ah001265, Ah018107, Ah024122, Ah030707, Ah030865, Ah030866, Ah035819
Amaranthaceae	Beta vulgaris	1	BVRB_5g116570
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg21175, Sbi_jg22628, Sbi_jg30470, Sbi_jg30490 ... Sbi_jg58760, Sbi_jg58781
Amaranthaceae	Salicornia europaea	3	Seu_jg16516, Seu_jg28633, Seu_jg28651
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00014232, GOSA_00014233, GOSA_00014978, GOSA_00014983 ... GOSA_00015001
Amaranthaceae	Suaeda glauca	31	Sgl01161, Sgl01173, Sgl06260, Sgl10884, Sgl12033, Sgl12232 ... Sgl12280, Sgl12356, Sgl16239, Sgl17326, Sgl17464, Sgl17510, Sgl17636, Sgl24281, Sgl29456, Sgl34160, Sgl34161, Sgl34162, Sgl39794, Sgl45422, Sgl45476, Sgl55268, Sgl55270, Sgl55271, Sgl55289, Sgl60533, Sgl60535, Sgl60555, Sgl79945, Sgl82377, Sgl82378
Amaranthaceae	Chenopodium album	18	gene:ENSEOMG00000005540, gene:ENSEOMG00000005896 ... gene:ENSEOMG00000006320, gene:ENSEOMG00000007498, gene:ENSEOMG00000008056, gene:ENSEOMG00000011411, gene:ENSEOMG00000015361, gene:ENSEOMG00000015503, gene:ENSEOMG00000023015, gene:ENSEOMG00000023968, gene:ENSEOMG00000024282, gene:ENSEOMG00000024366, gene:ENSEOMG00000024685, gene:ENSEOMG00000024870, gene:ENSEOMG00000025823, gene:ENSEOMG00000026035, gene:ENSEOMG00000026127, gene:ENSEOMG00000033242
Amaranthaceae	Chenopodium quinoa	23	CQ.Regalona.r1.1AG0004930, CQ.Regalona.r1.5AG0021990 ... CQ.Regalona.r1.5AG0022160, CQ.Regalona.r1.5AG0022370, CQ.Regalona.r1.5AG0022400, CQ.Regalona.r1.5AG0022420, CQ.Regalona.r1.5AG0022430, CQ.Regalona.r1.5AG0022480, CQ.Regalona.r1.5AG0022490, CQ.Regalona.r1.5AG0022500, CQ.Regalona.r1.5BG0020380, CQ.Regalona.r1.5BG0023570, CQ.Regalona.r1.5BG0023770, CQ.Regalona.r1.5BG0023800, CQ.Regalona.r1.5BG0023810, CQ.Regalona.r1.5BG0023850, CQ.Regalona.r1.5BG0023860, CQ.Regalona.r1.5BG0023870, CQ.Regalona.r1.7AG0011730, CQ.Regalona.r1.8BG0006100, CQ.Regalona.r1.8BG0013090, CQ.Regalona.r1.8BG0014890, CQ.Regalona.r1.8BG0015780
Plumbaginaceae	Limonium bicolor	2	Lb2G10874, Lb3G17282
Portulacaceae	Portulaca oleracea	15	evm.TU.LG01.2534, evm.TU.LG01.2535, evm.TU.LG01.2536 ... evm.TU.LG01.2541, evm.TU.LG01.2543, evm.TU.LG01.2544, evm.TU.LG01.2545, evm.TU.LG02.884, evm.TU.LG14.1673, evm.TU.LG14.1674, evm.TU.LG14.1675, evm.TU.LG14.1680, evm.TU.LG14.1681, evm.TU.LG14.1682, evm.TU.LG14.1683