Basic Information
Locus ID:
evm.TU.LG14.1643
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 39017576 | 39019030 | + | evm.TU.LG14.1643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 43,569.96 Da | 46.97 | 76.21 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 58 | 1.8E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 67 | 2.62E-11 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 102 | 290 | 2.48E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 58 | 2.4E-5 | - |
| SMART | SM00256 | fbox_2 | 18 | 59 | 0.001 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 119 | 318 | 9.5E-23 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_010671904.2 | F-box protein CPR1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9DXS7 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16204 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2494, evm.TU.LG01.2495, evm.TU.LG01.2496 ... |