Basic Information
Locus ID:
evm.TU.LG14.1640
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Class S F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 39005162 | 39009427 | + | evm.TU.LG14.1640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 94,854.59 Da | 42.55 | 82.93 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 404 | 439 | 0.003 | IPR001810 |
| Pfam | PF00646 | F-box domain | 26 | 55 | 1.6E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 403 | 465 | 2.09E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 71 | 3.4E-9 | IPR036047 |
| SMART | SM00256 | fbox_2 | 21 | 59 | 1.6 | IPR001810 |
| SMART | SM00256 | fbox_2 | 404 | 444 | 7.1E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 133 | 337 | 1.7E-18 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 513 | 731 | 4.3E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 398 | 450 | 10.795695 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_027120482.1 | uncharacterized protein LOC113737451 [Coffea arabica] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9DXS7 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16204 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2494, evm.TU.LG01.2495, evm.TU.LG01.2496 ... |