Basic Information
Locus ID:
evm.TU.LG14.1514
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 37487062 | 37496477 | - | evm.TU.LG14.1514 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 162,997.16 Da | 42.30 | 71.81 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 1042 | 1081 | 2.64278E-17 | - |
| CDD | cd04301 | NAT_SF | 1239 | 1299 | 0.00564156 | - |
| Pfam | PF16135 | Tify domain binding domain | 964 | 1013 | 2.8E-19 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1028 | 1083 | 8.86E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1234 | 1317 | 1.44E-5 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1032 | 1127 | 1.1E-15 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 545 | 557 | 4.2 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 675 | 687 | 1.2 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 283 | 295 | 60.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 440 | 452 | 2.1 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 591 | 603 | 18.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 226 | 238 | 280.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 338 | 350 | 60.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 395 | 405 | 150.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 500 | 512 | 1.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1041 | 1082 | 2.1E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1083 | 1145 | 27.0 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 630 | 642 | 6.6 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1039 | 1084 | 9.8727 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1180 | 1336 | 9.497652 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1042 | 1081 | - | IPR019786 |
| PRINTS | PR00929 | AT-hook-like domain signature | 673 | 683 | 3.7E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 545 | 555 | 3.7E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 589 | 600 | 3.7E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 779 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 905 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1343 | 1363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1401 | 1468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1401 | 1421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 702 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.4 | - | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology