Basic Information
Locus ID:
evm.TU.LG14.1464
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 37005939 | 37016382 | - | evm.TU.LG14.1464 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 57,845.34 Da | 54.92 | 78.41 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 341 | 515 | 7.08024E-107 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 340 | 444 | 1.8E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 10 | 105 | 1.2E-12 | IPR015063 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 21 | 125 | 6.54E-5 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 339 | 471 | 2.09E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 330 | 515 | 1.1E-70 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 129 | 5.1E-29 | - |
| SMART | SM00232 | pad1_6 | 340 | 468 | 2.5E-21 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 341 | 469 | 31.699478 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 225 | - | - |
| Coils | Coil | Coil | 84 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021736374.1 | AMSH-like ubiquitin thioesterase 1 [Chenopodium quinoa] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ETU7 | MPN domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology