Basic Information
Locus ID:
evm.TU.LG14.1348
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
DNA repair protein recA homolog 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 35618797 | 35633007 | - | evm.TU.LG14.1348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 45,468.76 Da | 33.04 | 92.89 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 69 | 389 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 72 | 334 | 3.4E-116 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 71 | 333 | 6.43E-54 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 334 | 390 | 1.57E-18 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 93 | 333 | 2.6E-78 | IPR027417 |
| Gene3D | G3DSA:3.30.250.10 | - | 334 | 403 | 2.9E-21 | - |
| SMART | SM00382 | AAA_5 | 121 | 292 | 9.5E-11 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 69 | 389 | 1.6E-143 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 263 | 338 | 27.898792 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 100 | 258 | 28.442043 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 277 | 285 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 274 | 302 | 5.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 229 | 258 | 5.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 309 | 338 | 5.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 157 | 186 | 5.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 191 | 220 | 5.6E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 363 | 380 | 5.6E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 70 | 395 | 45.211056 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021741976.1 | DNA repair protein recA homolog 1, chloroplastic [Chenopodium quinoa] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AV41 | DNA repair protein recA homolog 1, chloroplastic OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology