Basic Information
Locus ID:
evm.TU.LG13.760
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 8930365 | 8934509 | - | evm.TU.LG13.760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 65,464.03 Da | 48.10 | 81.04 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 56 | 190 | 3.24972E-16 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 17 | 340 | 5.4E-107 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 343 | 401 | 6.5E-11 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 342 | 472 | 6.87E-32 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 17 | 188 | 1.47E-37 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 191 | 340 | 3.14E-61 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 160 | 341 | 6.2E-80 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 343 | 462 | 4.8E-25 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 49 | 104 | 1.6E-12 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 103 | 575 | 2.6E-160 | IPR014492 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 4 | 102 | 2.2E-30 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_022735871.1 | nuclear poly(A) polymerase 1 isoform X3 [Durio zibethinus] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9A937 | polynucleotide adenylyltransferase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology